Oleksandr Maistrenko<p><a href="https://mstdn.science/tags/Metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Metagenomics</span></a> <a href="https://mstdn.science/tags/Microbiome" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Microbiome</span></a> <a href="https://mstdn.science/tags/Archaea" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Archaea</span></a> <a href="https://mstdn.science/tags/Bacteria" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bacteria</span></a> <a href="https://mstdn.science/tags/MicrobialDarkMatter" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MicrobialDarkMatter</span></a> <a href="https://mstdn.science/tags/TreeOfLife" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>TreeOfLife</span></a></p>
#metagenomics
0 posts0 participants0 posts today
Postdoctoral Research Scientist in Metagenomics
Earlham Institute
See the full job description on jobRxiv: https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95764
#biodiversity #ecology #evolution #metagenomics #microbiome #ScienceJobs #hiring #research
https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95764
jobRxivPostdoctoral Research Scientist in MetagenomicsPost a job in 3min, or find thousands of job offers like this one at jobRxiv!
Pipeline release! nf-core/ampliseq v2.14.0 - Ampliseq Version 2.14.0!
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.14.0
GitHubRelease Ampliseq Version 2.14.0 · nf-core/ampliseqnf-core/ampliseq version 2.14.0 - 2025-05-23
Summary of changes
Multi-region analysis is now easier with custom databases, parameters were changed or added
Updated sbdi-gtdb, gtdb, PR2 databases a...
Postdoctoral Research Scientist in Metagenomics
Earlham Institute
See the full job description on jobRxiv: https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95298
#biodiversity #ecology #evolution #metagenomics #microbiome #ScienceJobs #hiring #research
https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95298
jobRxivPostdoctoral Research Scientist in MetagenomicsPost a job in 3min, or find thousands of job offers like this one at jobRxiv!
Continued thread
We'll provide training on how to add data to our GitHub repository & interpret radiocarbon dates. You'll also get to work with us on integrating new data into AncientMetagenomeDir! 
You can participate for as long as you'd like—every bit of help counts! 
Register by April 20th to secure your spot! 
https://docs.google.com/forms/d/e/1FAIpQLSdtggNI8yBfxJmO7a9xvi4xAA1xuoQjY8nXVwE2GF9NC-h-NA/viewform
Google DocsC14 AncientMetagenomeDir Hackathon April 2025Event Timing: April 29th, 2025 10:00 - 18:00 CEST
New release of AncientMetagenomeDir! (v25.03.0, Historic Centre of Cordoba)
https://github.com/SPAAM-community/AncientMetagenomeDir/releases/tag/v25.03.0
It is a community resource of #metadata of >2K shotgun-sequenced #AncientMetagenome or ancient microbial genome enriched samples & >5K libraries. Stats below:
Release v25.03.0: 
206 (+8) publications
1672 (+132) ancient host-associated metagenome samples
768 (+33) ancient microbial genomes
713 (+0) ancient environmental samples
GitHubRelease v25.03: Historic Centre of Cordoba · SPAAM-community/AncientMetagenomeDirRelease v25.03.0 includes 8 new publications, representing 132 new ancient host-associated metagenome samples, 33 new ancient microbial genomes, and 0 new ancient environmental samples. This brings...
How do microbes pass from parent to child—or persist for years?
Find out in our next NFDI4Microbiota Coffee Talk on 28 April, 14:30 CEST with Daniel Podlesny (EMBL), who will present SameStr – a powerful new tool for strain-resolved metagenomics. Zoom: ID 687 6408 9023 | PW: 826218
#Microbiome #Metagenomics #FAIRdata #OpenScience
Pipeline release! nf-core/ampliseq v2.13.0 - Ampliseq Version 2.13.0!
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.13.0
GitHubRelease Ampliseq Version 2.13.0 · nf-core/ampliseqnf-core/ampliseq version 2.13.0 - 2025-04-04
Summary of changes
Zenodo changed from zenodo.org/record to zenodo.org/records and some taxonomic databases could not be downloaded any more
Add most r...
Pipeline release! nf-core/mag v3.4.0 - mag 3.4.0 - Green Gecko!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.4.0
GitHubRelease mag 3.4.0 - Green Gecko · nf-core/magAdded
#745 - Added pipeline parameter spades_downstreaminput to use contigs instead of scaffolds (by @Pranjal-Bioinfo, @jfy133, @GallVp & @sateeshperi).
#745 - Added trimmomatic as an additional p...
Eruption of a phd defense
This morning an eruption started in Reykjanes
And in the afternoon Clara Jégousse had her phd defense
Exploration of microbial communities from Icelandic marine waters using metagenomics.
During the talk an earthquake hit, but she did not loose her stride
#metagenomics #marinelife #microbes #ecology #iceland #eruption #Reykjanes
https://hi.is/vidburdir/doktorsvorn_i_matvaelafraedi_clara_anne_therese_jegousse
Still a few days left to register to our virtual #speed-networking event between PIs and young researchers (MSc/PhD/Postdocs)!
When? Wednesday April 9th 11.00AM-01.00PM CET. Registration deadline: April 2nd. Grab your slot!
For more information and registration, check out the following google form:
https://docs.google.com/forms/d/1qc7QMZRn-7dAygr1x7IjH1s3JCgJNVTgtIuiyeQdwE8
Google DocsSpeed networking between PIs and young researchers - April 2025 editionInterest and registration form for PI speed networking for April 9th, 11:00 AM - 01.00 PM CET
The following PIs are open to meeting with interested junior researchers (prospective masters, PhDs, postdocs, etc.) to discuss anything under the sun (but mainly background, research interests, info about the lab environment/supervision styles, potential projects etc.) -- This is meant to be an informal chat, like those you can have during a conference rather than an interview or anything like that.
Here is a list of the PIs participating and some brief information about them:
- Assoc. Prof. Martin Sikora (University of Copenhagen, Globe Institute, https://globe.ku.dk/research/geogenetics/sikora-group/)
- Dr. Lucy van Dorp (University College London, Genetics Institute, https://www.ucl.ac.uk/~ucbpvan/).
- Dr. Alexander Herbig (Max Planck Institute for Evolutionary Anthropology, https://www.eva.mpg.de/archaeogenetics/research-groups/computational-pathogenomics/)
- Assoc. Prof. Verena Schuenemann (University of Zurich, https://www.iem.uzh.ch/en/research/paleogenetics_group_schünemann.html).
- Prof. Ludovic Orlando (Université de Toulouse III, Faculté de Médecine Purpan, https://cagt.cnrs.fr/ages/)
- Prof. Nicola Segata (Università Di Trento, http://segatalab.cibio.unitn.it/contacts.html)
- Assoc. Prof. Michael D. Martin (NTNU University Museum, https://www.ntnu.edu/employees/mike.martin)
You can sign up to talk to more than one PI. However, to allow most participants to meet with the PIs they are interested in, we ask you to select two first choices. When assigning people to the PIs time slots we will prioritize the people that have expressed to meet a PI as a first choice over people that have not. Slots related to the two first choices will be allocated on a first-come-first-served basis. Each chat with a PI will last roughly 12/13 minutes.
We will send details of how to attend in a follow up email prior to the event confirming who you will talk to and roughly when.
Registration closes on Wednesday April 2nd.
Data protection: Please note that submission to Google Forms results in data being stored on Google Servers including those located in the United States. If at any point you wish your responses to be removed from use of the SPAAM community, please contact a member of the steering committee for removal of your personal data.
(2020) "Metagenomic analysis of a blood stain from the French revolutionary Jean-Paul Marat (1743–1793)" https://www.sciencedirect.com/science/article/pii/S1567134820300411 #France #revolution #metagenomics
Pipeline release! nf-core/metatdenovo v1.1.1 - nf-core/metatdenovo 1.1.1!
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.1.1
GitHubRelease nf-core/metatdenovo 1.1.1 · nf-core/metatdenovoThis release addresses a problem with the BBNorm process that sometimes got killed because it used too much memory. In addition, some tools were upgraded, among them all BBMap-based tools.
Pipeline release! nf-core/taxprofiler v1.2.3 - v1.2.3 - Bouncy Basenji Patch!
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.3
GitHubRelease v1.2.3 - Bouncy Basenji Patch · nf-core/taxprofilerAdded
#576 Sort input to krakenuniq to enable retrieval of cached batch tasks (❤️ to @muniheart for reporting and fix)
#569 Updated to nf-core pipeline template v3.1.2 (added by @sofstam)
#571 Upd...
New paper in Molecular Ecology Resources sharing data in @gbif:
Navigating Past #Oceans: Comparing #Metabarcoding and #Metagenomics of #Marine Ancient Sediment Environmental #DNA 
#OpenAccess: 
️